Scaffold Ga0098042_1006129

Overview

Basic Information

• Taxon OID: 3300006749
• Scaffold ID: Ga0098042_1006129
• Source Dataset Name: Marine viral communities from the Subarctic Pacific Ocean - 9_ETSP_OMZ_AT15188 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4024
• Total Scaffold Genes: 17
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 16 (94.12%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 6 (100.00%)
• Associated Families: 6

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): -14.198
  • Long. (^o): -77.499
  • Depth (m): 38

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006867	Metagenome / Metatranscriptome	363	Y
F015346	Metagenome / Metatranscriptome	255	Y
F021674	Metagenome	218	Y
F031481	Metagenome	182	Y
F054842	Metagenome	139	Y
F063682	Metagenome	129	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0098042_100612912	F031481	GGAGG	MKVGDLVKRHKGWQGSSRQQLGLVVDVDRAVITVQWSGDYGTFSHPITSLEVLNEAG*
Ga0098042_100612914	F054842	GAGG	MSKNEWRKDLKVGDLVMMKSGHMAVLTKVFFRFPETDPAYPHVEIIYCEDNSGGSCSAWRVEELLNASR*
Ga0098042_10061292	F021674	GGAG	MERETYNTRLKSNPKDIPVGSLLRCKKHCRKNVTIKQNGEYGILVTTVNKGKYITHDVLFPNGTRCIYMPLNWEVVSYAR*
Ga0098042_10061293	F015346	GAGG	MEHKIYNVGELVAVASSRVLGIVTKSNYWALDEYLGGEIEFVDVMFGGHESKQYPVRYLLEL*
Ga0098042_10061294	F063682	GGAGG	MKPGDLVRIRKTSIDHMSANWFIWHAEKMTPLVLIKELNKSYWNVLKPDGETVFIHKSHLTTRMY*
Ga0098042_10061297	F006867	GGAGG	VLQGKELHESIQKRCRIQPGMLVKSSHADVIDKLALVVKVSPACSFDRDYEGAEEHIFYLCEPFDGTPSFVDYVCNLEQVS*