Scaffold Ga0098042

Basic Information
Taxon OID	3300006749 Open in IMG/M
Scaffold ID	Ga0098042_1005501 Open in IMG/M
Source Dataset Name	Marine viral communities from the Subarctic Pacific Ocean - 9_ETSP_OMZ_AT15188 metaG
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300006749 Open in IMG/M

Scaffold ID

Ga0098042_1005501 Open in IMG/M

Source Dataset Name

Marine viral communities from the Subarctic Pacific Ocean - 9_ETSP_OMZ_AT15188 metaG

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	4281
Total Scaffold Genes	11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	10 (90.91%)
Novel Protein Genes	5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	4 (80.00%)
Associated Families	5

Scaffold Components

Scaffold Length (bps)

4281

Total Scaffold Genes

11 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

10 (90.91%)

Novel Protein Genes

5 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

4 (80.00%)

Associated Families

Taxonomy
All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses → Prokaryotic dsDNA virus sp.	(Source: UniRef50)

Taxonomy

All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses → Prokaryotic dsDNA virus sp.

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location Name	Pacific Ocean
Coordinates	Lat. (^o)	-14.198	Long. (^o)	-77.499	Alt. (m)	Depth (m)	38
Location on Map

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Source Dataset Sampling Location

Location Name

Pacific Ocean

Coordinates

Lat. (^o)

-14.198

Long. (^o)

-77.499

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F022417	Metagenome / Metatranscriptome	214	N
F028777	Metagenome / Metatranscriptome	190	Y
F050395	Metagenome / Metatranscriptome	145	Y
F057387	Metagenome / Metatranscriptome	136	Y
F081225	Metagenome	114	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0098042_100550110	F050395	AGGA	MYPIKSKNKFTWAYKFLYWNSDQNIVYLYTIETKEGFQVAESAAWGNATFDGCNNMKYIGKNKMEVENGTYA*
Ga0098042_10055012	F081225	N/A	MMVGTIGTVVSIVGGDMVNANNRRDFKAEEYDLYDVRKARPFWNQVCEANQWQVIKDEEDFAEDYVCKILNNLYVMELQVVGYWHNFNKDNISNLWISASKVDNLKKKAQAKNTRSGLIFLNCVPNRFIGIDIEEIKEAYKVNKSSGEKSYQIPIQKIDYLYKELLDNNFCDCLENHIEIMDQGNGRIPMAQRNVNLRGKNGICC*
Ga0098042_10055014	F057387	AGG	MSILSKPLQAFWNNQVANDNVKATPFSGNCMFCSKAITEKDEDHSVCNTCWADLGDDE*
Ga0098042_10055018	F028777	GAG	MLGLFARNKHSNMEILFFEKDISEFRKIRYILEVEGKICSLDPEFSTSGNLRKAVHRLNKDYNSKIYKEECNCNFKIKGKLNMDGTPRKHYAYIKDWAS*
Ga0098042_10055019	F022417	GGAGG	MAHMPKFLEDYTTVDELINKMNTEYPECRLIAEMIGYGDDWVIFKSSFYETKEDTDPKAVAYAKQTSKDHNSWFEMANTKANGRCLRIVFSESTLAEEMIGIAPSKDADPEKSNLDKKVEALEAEGLVTDISHKAQAVMNSIKDFAMDCTSQDLDKARLLTASALTELGIRKEDVSITNLQAVKDKIQDIASSEKAS*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0098042_1005501

Overview

Ecosystem & Geography

Associated Families

Sequences