Scaffold Ga0098042_1002962

Overview

Basic Information

• Taxon OID: 3300006749
• Scaffold ID: Ga0098042_1002962
• Source Dataset Name: Marine viral communities from the Subarctic Pacific Ocean - 9_ETSP_OMZ_AT15188 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6069
• Total Scaffold Genes: 17
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 10 (58.82%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): -14.198
  • Long. (^o): -77.499
  • Depth (m): 38

Associated Families

Family	Category	Number of Sequences	3D Structure?
F051058	Metagenome	144	N
F068727	Metagenome / Metatranscriptome	124	Y
F077191	Metagenome	117	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0098042_100296215	F068727	GAGG	MRKFTVEFYANNEYSVRERLQEIGRSIDNVVWPWTPTESSNTKKASGCIEEEKQYHLSDYEYEKEDPTWKYGSNYVTTGKWKMQVVPDEEYVKFQKSPEL*
Ga0098042_10029622	F077191	N/A	MEEEKPKAGRIEFDVKRQLWIVFNGEEWVEVDLKKHRCNFNDENMNKY*
Ga0098042_10029629	F051058	AGAAG	MIETPSLLSPCGSYQVDFFPIKGRSDLFLRCGVFEGLIEFQECVSHVEMFREVESKRFRKFRTIKQNKIPQEIII*