Scaffold Ga0098042_1002632

Overview

Basic Information

• Taxon OID: 3300006749
• Scaffold ID: Ga0098042_1002632
• Source Dataset Name: Marine viral communities from the Subarctic Pacific Ocean - 9_ETSP_OMZ_AT15188 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6467
• Total Scaffold Genes: 17
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (35.29%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): -14.198
  • Long. (^o): -77.499
  • Depth (m): 38

Associated Families

Family	Category	Number of Sequences	3D Structure?
F015933	Metagenome / Metatranscriptome	251	Y
F023483	Metagenome / Metatranscriptome	210	Y
F028800	Metagenome / Metatranscriptome	190	Y
F066151	Metagenome	127	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0098042_100263212	F028800	N/A	MNKIEIIDGHDGFEREVTGTYNLDGNNVYEWELYTYDGLTSIYFKDAEADFSLEDEDDMEQIGLTEEEGERIFDEILDFVNDNGYSFIGEEFE*
Ga0098042_100263214	F023483	N/A	MNKLHLSIADVTKIYGEALEHETGMPVNNLANVFDYDGYRLNYDSLADNIIIKILGAYVQFEMEDTDITCINNNDGKGWFFAY*
Ga0098042_10026325	F015933	N/A	MKTKENLEAGMYFSFKKTFRSYTNDVYNIETSKDGYMTLHRHHCHSKTGEYIPVDLVTVRRIGENSLDYYKYDMFGKKTRGRIHYNSIDSFFYAKKAKDGKEYTHIEKCPIPGIDAIAV*
Ga0098042_10026326	F066151	N/A	MSNEKQLVGWELVHFLMQRFNMTEDEALQNLAENIGNVELNK*