Scaffold Ga0098042_1002595

Overview

Basic Information

• Taxon OID: 3300006749
• Scaffold ID: Ga0098042_1002595
• Source Dataset Name: Marine viral communities from the Subarctic Pacific Ocean - 9_ETSP_OMZ_AT15188 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6508
• Total Scaffold Genes: 19
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 13 (68.42%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): -14.198
  • Long. (^o): -77.499
  • Depth (m): 38

Associated Families

Family	Category	Number of Sequences	3D Structure?
F017047	Metagenome / Metatranscriptome	243	Y
F031294	Metagenome	183	N
F031661	Metagenome	182	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0098042_10025953	F017047	GGAG	MNTETDYKNELVQILWYLFKDVHGVRPRGMGYEKYSIADLEHEVARLQRSLEEEIRHEREMEDRAINACMDCGASDIATAMRWLEDAYDMEWV*
Ga0098042_10025955	F031294	GGAG	MKFEMLDLFLVAMLMVGIFFGLAMLSLHGVGHMTWLSWTLLGSSAWCLVVGWGIVAYNLEK*
Ga0098042_10025956	F031661	AGGAG	MTNPNRKSFAVQLAEANNTFEARGLVLSRWDKSITRGDVNRFQKLCEFGGFWYSLGQILVQLRTESGGSRTDSALLKNASLHSVAKQRRSEAMKFFENFPVIVENDLLGKKSSICHMKDLLKEVDKIVNPKVEDEPFLEATIVADEPEVLAIEDKSSEAVPQSKKTAEDLALEVLLQVELNEVSLADFKIAMANAIGMIEQNNEVVPFKAVG*