Basic Information | |
---|---|
Taxon OID | 3300006749 Open in IMG/M |
Scaffold ID | Ga0098042_1002381 Open in IMG/M |
Source Dataset Name | Marine viral communities from the Subarctic Pacific Ocean - 9_ETSP_OMZ_AT15188 metaG |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
---|---|
Scaffold Length (bps) | 6812 |
Total Scaffold Genes | 19 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 4 (21.05%) |
Novel Protein Genes | 4 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 0 (0.00%) |
Associated Families | 4 |
Taxonomy | |
---|---|
Not Available | (Source: ) |
Source Dataset Ecosystem |
---|
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico |
Source Dataset Sampling Location | ||||||||
---|---|---|---|---|---|---|---|---|
Location Name | Pacific Ocean | |||||||
Coordinates | Lat. (o) | -14.198 | Long. (o) | -77.499 | Alt. (m) | Depth (m) | 38 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F020115 | Metagenome / Metatranscriptome | 226 | Y |
F025275 | Metagenome | 202 | Y |
F032639 | Metagenome / Metatranscriptome | 179 | Y |
F084107 | Metagenome | 112 | Y |
Protein ID | Family | RBS | Sequence |
---|---|---|---|
Ga0098042_10023812 | F020115 | N/A | MMNNMMTYEQFEVLRQWAERVANTANDTDTNIRSIDLVHDIAGILANDEHFLPRL* |
Ga0098042_10023813 | F084107 | N/A | MITEDLNLQDLTLEISSAFNDTGAYWKLIDVLSNQNKILNRDEIEELVDRLEAFITQEVQEIIDER* |
Ga0098042_10023815 | F032639 | N/A | MKKQLINEDGFYAGSELMWSLEDVLRVLNEMNMTASKKDLGRVLIASFQDNDMLMQYINDAIGETIAYMIEEGQLKTEEL* |
Ga0098042_10023817 | F025275 | N/A | MKYYALLHGVCGLAEGYSDTTVRWFNDLDKALEAKGKLVAILMDGNEAESCTTSTDGMESVVTFDSNEAEEEIVKIIELKPTWPESKDIREYLVWDQMNCEAPFDGDYMPTDMAVIKDLCERQEAVADTLDIESFHEFVRDIWYGNTAMFDADDLCIYYFKLPKEFKS* |
⦗Top⦘ |