Scaffold Ga0098042

Basic Information
Taxon OID	3300006749 Open in IMG/M
Scaffold ID	Ga0098042_1001400 Open in IMG/M
Source Dataset Name	Marine viral communities from the Subarctic Pacific Ocean - 9_ETSP_OMZ_AT15188 metaG
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300006749 Open in IMG/M

Scaffold ID

Ga0098042_1001400 Open in IMG/M

Source Dataset Name

Marine viral communities from the Subarctic Pacific Ocean - 9_ETSP_OMZ_AT15188 metaG

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	9169
Total Scaffold Genes	25 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	4 (16.00%)
Novel Protein Genes	7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	7

Scaffold Components

Scaffold Length (bps)

9169

Total Scaffold Genes

25 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

4 (16.00%)

Novel Protein Genes

7 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

0 (0.00%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location Name	Pacific Ocean
Coordinates	Lat. (^o)	-14.198	Long. (^o)	-77.499	Alt. (m)	Depth (m)	38
Location on Map

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Source Dataset Sampling Location

Location Name

Pacific Ocean

Coordinates

Lat. (^o)

-14.198

Long. (^o)

-77.499

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F015933	Metagenome / Metatranscriptome	251	Y
F020797	Metagenome	222	Y
F025153	Metagenome / Metatranscriptome	203	N
F042580	Metagenome	158	Y
F047319	Metagenome / Metatranscriptome	150	N
F079230	Metagenome	116	N
F087177	Metagenome	110	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0098042_100140013	F020797	N/A	VIKLETILKSIPNQEIIESHLGQWEYPGRITRIPSNQITMQPDPRTGKPIQHILLIIGDQSGQKKIGIPGGPNLFFPNDQTVTEYPIKRYM*
Ga0098042_100140016	F025153	N/A	LIKLKDILEQSIGFQIPGTPKQKNIGRKTRQEFAKFFNNFEAGSTNTAISNYAEQIMNSDAPDDIKKKASEILNEMEKVAIDIQDELHTRQISDDKAAETLFDYVNSEMDADDSIEFEQLLWYDNQIDSSINSGMIENAVAIMEQLLGQLEFIRGFIIQIFPEISPAGFKR*
Ga0098042_100140020	F079230	N/A	MIDSLIYGVVASSFVIGITRSVLLLYKRFPRLGFGLVYGSLGVKMFALGAFTLLSKPYIDNIIIYCSIILSSIIYSNVYLALKLHRK*
Ga0098042_100140023	F015933	N/A	MKIKENIEAGMYFSFKKTHRSYTDDVYKIETGKNGYTTLHRYHIHSKTGEYIFTDLVSVRRIGENSLDYYKFDMFGKKTRGRIHYDSIDSFFYIKQDVDGNDYTKIEKAA*
Ga0098042_100140025	F087177	N/A	QMFQRIDDLKNDIEKKIPNEVKDKALEIMKGLEKKYDGVEINLRSFIKACRICAMGFDNAEGMVAEQIIKA*
Ga0098042_10014005	F042580	N/A	MARPKLPEIDKLKKRVRKRYPGSYCVQNSIGEYYIEWQSENLNDTFLMENSSSEIEAWRQATITAKHEQHINRTHPLKALMSQEQKNQNKERITRRIRKL*
Ga0098042_10014006	F047319	N/A	MYTQGETVIVTEFIDKKANEVKHSVGVIMKSFVHKKQIFYDVLLERRTGLSFLNTSKTSKLAYINRDLTTKLIDSDSIECTIPFKQMLEMEELPIMIA*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0098042_1001400

Overview

Ecosystem & Geography

Associated Families

Sequences