Scaffold Ga0098042_1001397

Overview

Basic Information

• Taxon OID: 3300006749
• Scaffold ID: Ga0098042_1001397
• Source Dataset Name: Marine viral communities from the Subarctic Pacific Ocean - 9_ETSP_OMZ_AT15188 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 9177
• Total Scaffold Genes: 22
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 11 (50.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): -14.198
  • Long. (^o): -77.499
  • Depth (m): 38

Associated Families

Family	Category	Number of Sequences	3D Structure?
F029239	Metagenome / Metatranscriptome	189	Y
F052869	Metagenome	142	Y
F054342	Metagenome	140	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0098042_100139710	F029239	GAG	MSVTKDSPNSNGDTSLQGLEIDWHLANTEMGFDNFVEPVSDSQPTHVYA*
Ga0098042_100139714	F052869	GGAG	MNKLVKIVILTLIGTGCFGTGLYYSTIRFNQTLDNIKSEYDVISEQVDAFVDLSNPKTIRFYTTELRRLLDDIKFLHVLIESGQIADEKLDEYLASKEGNVDGIMKRLDGITSEVDSMLTSSHDHMHLMVEELQDEVTSQLINSDVTSKVDSLNKQITSLENKLDDVNKVIDKIKNSKMSKYLK*
Ga0098042_10013973	F054342	N/A	MVKRFKKLTEYWKKLTITLALPILIINSVMDYYYGWEARQQVIQEDYKLKWFILSHNHTEYFPAETIIDVDGNPIFFEEGGGEVDWNKLKEKGFGDMIPNPTDSFTPEAKVDSYLSRIFKPIKNTKDRFNNWWRGLYKEKQIKELRG*