Scaffold Ga0098042_1000648

Overview

Basic Information

• Taxon OID: 3300006749
• Scaffold ID: Ga0098042_1000648
• Source Dataset Name: Marine viral communities from the Subarctic Pacific Ocean - 9_ETSP_OMZ_AT15188 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 13528
• Total Scaffold Genes: 25
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (28.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): -14.198
  • Long. (^o): -77.499
  • Depth (m): 38

Associated Families

Family	Category	Number of Sequences	3D Structure?
F009493	Metagenome	317	N
F033012	Metagenome	178	N
F047926	Metagenome / Metatranscriptome	149	N
F095404	Metagenome / Metatranscriptome	105	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0098042_100064812	F033012	N/A	MQKATVTAAQPTGQWEGQYGVMYTFNVTLSDGTTGEVNSKKPQLRFGIGEEVEYSIPREGKLKLDRPNEGGFMNSTPSAKPSYSGGKDYSKQHALNAACTFLNGSKATKEQVVALADYFATWLKGSAAPQIQQASPAETAPAPAPAASSFESNGLPF*
Ga0098042_100064813	F095404	N/A	MHYLTNYTTDKVKLAYMYSEWLRHNWRSLPEERIEQLLSQISELTNVDFITQQYDSKL*
Ga0098042_100064818	F009493	N/A	MKKRKNKEIVITLGKVPSLNSFYAGSHWTKRKKAKDAALEEIKSQLGFNENASYHSFRITAYVRYRYDLDNSIIAVKFCSDALKALGWIKDDSPKHFRYLLLVWQESIPTNTAKIAIELSDEYPQ*
Ga0098042_100064821	F047926	N/A	MWVEIAKNTWAKAKNDKDAKRILKKYKGYKKKQGDLTSRHFIVNYIEDENTIK*