Scaffold Ga0098042

Basic Information
Taxon OID	3300006749 Open in IMG/M
Scaffold ID	Ga0098042_1000566 Open in IMG/M
Source Dataset Name	Marine viral communities from the Subarctic Pacific Ocean - 9_ETSP_OMZ_AT15188 metaG
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300006749 Open in IMG/M

Scaffold ID

Ga0098042_1000566 Open in IMG/M

Source Dataset Name

Marine viral communities from the Subarctic Pacific Ocean - 9_ETSP_OMZ_AT15188 metaG

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	14401
Total Scaffold Genes	33 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	33 (100.00%)
Novel Protein Genes	7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	7 (100.00%)
Associated Families	7

Scaffold Components

Scaffold Length (bps)

14401

Total Scaffold Genes

33 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

33 (100.00%)

Novel Protein Genes

7 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

7 (100.00%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location Name	Pacific Ocean
Coordinates	Lat. (^o)	-14.198	Long. (^o)	-77.499	Alt. (m)	Depth (m)	38
Location on Map

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Source Dataset Sampling Location

Location Name

Pacific Ocean

Coordinates

Lat. (^o)

-14.198

Long. (^o)

-77.499

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003976	Metagenome / Metatranscriptome	459	Y
F010318	Metagenome / Metatranscriptome	305	Y
F010532	Metagenome	302	N
F010571	Metagenome	302	Y
F028971	Metagenome / Metatranscriptome	190	Y
F031261	Metagenome	183	Y
F038195	Metagenome	166	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0098042_100056611	F003976	AGGAGG	MGKVRDAYYEEKLDILDTLEKLDMSVRLLNVWVNEPMGFENAKYLLEKNANQKFDWFSRDMVKELVEEETYG*
Ga0098042_100056613	F031261	AGGAGG	MNRTKTYVMTVDKNSSNVLEQLNKLQQVRQSVSLLNKHSTKKHYVKCQGRWGYNNPDYNQRTIPFCPLDKAVKWDVYIYAR*
Ga0098042_100056614	F010318	GAGG	MNVDSDKPRYIECIYEAPITFDLEELGIDWDNVKDYYIKYGTLYVEFKDGSSGQYEGDQGETDWKWSAQENILTEGWSLVEGLN*
Ga0098042_100056616	F010532	GAGG	MNRTLYKKLEDICAREYILNKLSSSKFRTFVDFLYDDIRTWDEPMNVSEVDIIHRIEEHMSYMVSSYLTKPYEGIGMDEQALRQA*
Ga0098042_100056621	F028971	GGAG	MVDEIKDTELTPMTKAEYRAWEDYVIKYNEDNPKHPICYELTWDKDEYKVKLLDLKVDREGQE*
Ga0098042_10005668	F038195	AGGAGG	MKLHKDFYEYKTIPFTYFAKIKNRHDFKREWVTVRCQEDIMKQQPQNVEIRRLKKNV*
Ga0098042_10005669	F010571	AGGAGG	MSNIITETYADKLYEEQYEKHYQELSKTSDDVDWIENEAERLALIDLDNFEMEG*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0098042_1000566

Overview

Ecosystem & Geography

Associated Families

Sequences