Scaffold Ga0098042_1000565

Overview

Basic Information

• Taxon OID: 3300006749
• Scaffold ID: Ga0098042_1000565
• Source Dataset Name: Marine viral communities from the Subarctic Pacific Ocean - 9_ETSP_OMZ_AT15188 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 14404
• Total Scaffold Genes: 46
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 45 (97.83%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses → Prokaryotic dsDNA virus sp. (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): -14.198
  • Long. (^o): -77.499
  • Depth (m): 38

Associated Families

Family	Category	Number of Sequences	3D Structure?
F025385	Metagenome	202	Y
F081232	Metagenome	114	Y
F090864	Metagenome / Metatranscriptome	108	Y
F095340	Metagenome	105	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0098042_100056510	F025385	AGGAG	MSYFTDDNGVIKSFMSQTACKSKTLRTDGQSLWSFDTRIAEHVPDGNGNAATLVYDYTYGGGNYISQTTSNHVRLTKKQVPRQNWMNVNEAQKHGLCPLVESRNDTPRKTR*
Ga0098042_100056516	F095340	GGAG	MINYGDLVRVTKGQYKTHIGIVLDYRNTGRFYPSTELTIKLPNGATIIKDIDYIEKLGDNND*
Ga0098042_100056539	F081232	GGAG	MIEIGTLVRLKFKSVRYGRYKLVSEKIEHDEDKPVGIVVKRGYSGHKGPLVVKWINGNAEIGHPTGSIGYFDKYNVEVIA*
Ga0098042_10005659	F090864	GGAG	MIHLVKHDKVGAGYALQESDGRWVVRFFYNFHKHFEFTKHAFRQGYLKDCGAINIGETEWTTT*