NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0098035_1074802

Scaffold Ga0098035_1074802


Overview

Basic Information
Taxon OID3300006738 Open in IMG/M
Scaffold IDGa0098035_1074802 Open in IMG/M
Source Dataset NameMarine viral communities from the Subarctic Pacific Ocean - 3_ETSP_OMZ_AT15126 metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1203
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)-13.003Long. (o)-80.809Alt. (m)Depth (m)135
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F086172Metagenome111Y

Sequences

Protein IDFamilyRBSSequence
Ga0098035_10748022F086172N/AMNILYQEAINNRIQYHSEQIGRIKELGNREPVWSEPRKLFKKKHGKKQFEPFGVPYRTIGVYRIIYEPTGETMSIGCGIVSTRLYRHRSVFLNGGKDYLSPGGSSNGSATGGHMYKYNTHRKNWMFSWCDISNKSLAKEYEDVLIQSEKPLFNNKSMGGK*

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