Scaffold Ga0098035_1040846

Overview

Basic Information

• Taxon OID: 3300006738
• Scaffold ID: Ga0098035_1040846
• Source Dataset Name: Marine viral communities from the Subarctic Pacific Ocean - 3_ETSP_OMZ_AT15126 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1725
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (87.50%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): -13.003
  • Long. (^o): -80.809
  • Depth (m): 135

Associated Families

Family	Category	Number of Sequences	3D Structure?
F084099	Metagenome	112	Y
F090254	Metagenome	108	Y
F106167	Metagenome	100	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0098035_10408463	F084099	GAGG	MKIGDIVTMNTPLTPERYGLGLIQKIVRARQKSYRLVYHILWPDNTISCQYDNEIVLVSRVK*
Ga0098035_10408465	F106167	GGAG	MEIGDIVKLNTNPSVDWMHKYLEETFEVIEFPTKTGVKVKMVGTDPEWHWIIGKSDFEIAEKKD*
Ga0098035_10408466	F090254	AGAAG	MGIEETNYSAIDIVNLVDGAELVTVVREIYLCVWHGGSVVDVYDLTDASKEPDCQVLPMFAPRCMLTVHDAIDDYFEALDFDNENEGLTTNPVRGIVYTESDDPTEVN*