Scaffold Ga0098035_1025002

Overview

Basic Information

• Taxon OID: 3300006738
• Scaffold ID: Ga0098035_1025002
• Source Dataset Name: Marine viral communities from the Subarctic Pacific Ocean - 3_ETSP_OMZ_AT15126 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2300
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (77.78%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): -13.003
  • Long. (^o): -80.809
  • Depth (m): 135

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005148	Metagenome / Metatranscriptome	410	Y
F009404	Metagenome / Metatranscriptome	318	Y
F015879	Metagenome	251	Y
F060967	Metagenome / Metatranscriptome	132	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0098035_10250024	F015879	AGGAG	MKKDDVIIIACNVCGAMSHAVKTKIPKGYYVKDEFVLCKVCFGELK*
Ga0098035_10250027	F005148	GGAG	MKQKKYEEYLKRTLPESEEVECKKCEQKFFDEWNLLSLASLDMCMLCANRNLDKETIERKYHNVK*
Ga0098035_10250028	F009404	GAGG	MSSDEPEHIQPKGESLVKHCPICGVEFDEIVLTNRWLKCDSCETVFQVKVKTGE*
Ga0098035_10250029	F060967	GGAG	MNKSRVSRDLWRKVFNDNLINLSDGDARKQVVRDFLNDPVNKKAGWKAKDARFFRLGFQKVAKENNFNVMN