Scaffold Ga0098035_1016788

Overview

Basic Information

• Taxon OID: 3300006738
• Scaffold ID: Ga0098035_1016788
• Source Dataset Name: Marine viral communities from the Subarctic Pacific Ocean - 3_ETSP_OMZ_AT15126 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2906
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 10 (100.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): -13.003
  • Long. (^o): -80.809
  • Depth (m): 135

Associated Families

Family	Category	Number of Sequences	3D Structure?
F010027	Metagenome	309	Y
F012400	Metagenome	281	Y
F024571	Metagenome	205	Y
F041753	Metagenome / Metatranscriptome	159	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0098035_10167881	F041753	AGGA	LINYQVHFEKATSKGIKRGMRTIKARNEQEAIIKVKSVVEGSFGHWINRLANEWAV*
Ga0098035_101678810	F010027	AGGAG	MATATSRYSFEITSDEALAAHPKSGLPTVIVTGICTDKDGNSFDFVATNNLDQRYPERFKVNWNGSKARMPEVVGFGIADDVRSGRKVSNDLYFTRGARIAIARKCQQIWPEKRQRRSVAKVATS*
Ga0098035_10167882	F012400	AGGA	MKQKYSIKKFNGDDQYSWAVFRAQDVKGMRSPIFYGDAAPVVDGCSRSEANHYKTMLEEKS*
Ga0098035_10167886	F024571	AGGAGG	MDLNVDVIDNETGEIYREGVLLASAHIFIAKEAGKIVRDEVDIIDLDDIDGGGQMEVRSIYVDFPEEKLKRELSANAIIRAREFWQYEKGGGQVR*