Scaffold Ga0098035_1015251

Overview

Basic Information

• Taxon OID: 3300006738
• Scaffold ID: Ga0098035_1015251
• Source Dataset Name: Marine viral communities from the Subarctic Pacific Ocean - 3_ETSP_OMZ_AT15126 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3074
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 10 (90.91%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (100.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): -13.003
  • Long. (^o): -80.809
  • Depth (m): 135

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008649	Metagenome / Metatranscriptome	330	Y
F016323	Metagenome	248	Y
F023448	Metagenome / Metatranscriptome	210	Y
F023958	Metagenome	208	Y
F069347	Metagenome	124	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0098035_10152512	F008649	AGGAG	MTQLETLMLDVTNTLNHNGFDKVKITPNNNTDFTIRVGYWDRISASLIETMEQYHSVRITEYDWEDDDCGTLYRYLVEVVDESGYTLNELNELESNYTEEYLEEAEFLHRYETGEWGVA*
Ga0098035_10152515	F023958	AGGAG	MLQLAQLTDLIKAYDMIVTAKSSGLDFWEGFILILFILKDVAIVGGILGTIIWYVGGKK*
Ga0098035_10152516	F023448	AGGGGG	MSYNHDNVIDKLLKLNERIAVVVDDVDDEGREKDLIWCQRLLTDVKESGLVPSKEEFIMANLMWHKYGFLPTDRKSTEENMWKLIDGMLTQENPSKIGAIKMYRRFITNASLRESKEVVDAREQKIKRGW*
Ga0098035_10152517	F069347	GGA	MKPTKVHKARKRDTRRTEWGDPILNKLMKLKYLINDAYNHRQENDGETKSDKDWVMEEITNLRGGGWLTAVKMKVANEMWSKYGG*
Ga0098035_10152518	F016323	GGAG	MAGSKKLIDILDEMNLKEDDVNNMVVGKLNKLVSIIFEVDDYSEDVQFVSTIIEDLISSPHHRITKLEIEKCNNLYKQYKEQVK*