Basic Information | |
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Taxon OID | 3300006738 Open in IMG/M |
Scaffold ID | Ga0098035_1015251 Open in IMG/M |
Source Dataset Name | Marine viral communities from the Subarctic Pacific Ocean - 3_ETSP_OMZ_AT15126 metaG |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 3074 |
Total Scaffold Genes | 11 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 10 (90.91%) |
Novel Protein Genes | 5 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 5 (100.00%) |
Associated Families | 5 |
Taxonomy | |
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All Organisms → Viruses → Predicted Viral | (Source: DeepVirFinder) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico |
Source Dataset Sampling Location | ||||||||
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Location Name | Pacific Ocean | |||||||
Coordinates | Lat. (o) | -13.003 | Long. (o) | -80.809 | Alt. (m) | Depth (m) | 135 | Location on Map |
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Family | Category | Number of Sequences | 3D Structure? |
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F008649 | Metagenome / Metatranscriptome | 330 | Y |
F016323 | Metagenome | 248 | Y |
F023448 | Metagenome / Metatranscriptome | 210 | Y |
F023958 | Metagenome | 208 | Y |
F069347 | Metagenome | 124 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0098035_10152512 | F008649 | AGGAG | MTQLETLMLDVTNTLNHNGFDKVKITPNNNTDFTIRVGYWDRISASLIETMEQYHSVRITEYDWEDDDCGTLYRYLVEVVDESGYTLNELNELESNYTEEYLEEAEFLHRYETGEWGVA* |
Ga0098035_10152515 | F023958 | AGGAG | MLQLAQLTDLIKAYDMIVTAKSSGLDFWEGFILILFILKDVAIVGGILGTIIWYVGGKK* |
Ga0098035_10152516 | F023448 | AGGGGG | MSYNHDNVIDKLLKLNERIAVVVDDVDDEGREKDLIWCQRLLTDVKESGLVPSKEEFIMANLMWHKYGFLPTDRKSTEENMWKLIDGMLTQENPSKIGAIKMYRRFITNASLRESKEVVDAREQKIKRGW* |
Ga0098035_10152517 | F069347 | GGA | MKPTKVHKARKRDTRRTEWGDPILNKLMKLKYLINDAYNHRQENDGETKSDKDWVMEEITNLRGGGWLTAVKMKVANEMWSKYGG* |
Ga0098035_10152518 | F016323 | GGAG | MAGSKKLIDILDEMNLKEDDVNNMVVGKLNKLVSIIFEVDDYSEDVQFVSTIIEDLISSPHHRITKLEIEKCNNLYKQYKEQVK* |
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