Scaffold Ga0098035_1013261

Overview

Basic Information

• Taxon OID: 3300006738
• Scaffold ID: Ga0098035_1013261
• Source Dataset Name: Marine viral communities from the Subarctic Pacific Ocean - 3_ETSP_OMZ_AT15126 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3327
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (90.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): -13.003
  • Long. (^o): -80.809
  • Depth (m): 135

Associated Families

Family	Category	Number of Sequences	3D Structure?
F077930	Metagenome	117	Y
F094534	Metagenome	106	N
F096210	Metagenome	105	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0098035_10132613	F094534	GGAGG	MKILKWIDDYHSSFAVVVECKGKSYLVIDDSCHVIIYTSDREGVISKYPELCKIEGKMIGEVIRDNRTFTSNLRIWTKIDQNRVAK*
Ga0098035_10132616	F096210	GGAGG	MTYTQNWNRTDKLTYEDLKELLTSVVVDLTDSTFAIKKASDDGGTMVEIWIEGGLQGTPNPQIPKARGWRVVWCHCPEGYIEAFNIRK*
Ga0098035_10132617	F077930	GGAGG	MEYNNFKQALDEGIEFIAKTYPSSTWEGDVHDFYALLVRANFNNQVFLDYLKQAVDNKVYLPNNVTCVVNKGKITKVIIGG*