Scaffold Ga0098035_1011674

Overview

Basic Information

• Taxon OID: 3300006738
• Scaffold ID: Ga0098035_1011674
• Source Dataset Name: Marine viral communities from the Subarctic Pacific Ocean - 3_ETSP_OMZ_AT15126 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3583
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (57.14%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): -13.003
  • Long. (^o): -80.809
  • Depth (m): 135

Associated Families

Family	Category	Number of Sequences	3D Structure?
F030560	Metagenome / Metatranscriptome	185	Y
F042378	Metagenome	158	Y
F060342	Metagenome	133	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0098035_10116741	F060342	N/A	ILDNAQVNYPDESSPVDRDIDTSTITMAAETVAGLQTATYTARLAQSEDGAIYCRHGLPGGAAAAATKRGNVLTYKKRYAPSTPTGLTFIGSGGNSTQPPMTGLKTTYGSEILFNRGVYAGSTGNDQIVNDTANQTLYGIRTIVRRNLLNLNDADVLSAATNFVLLYSTPALRVSQLTCMPRSMTEAQAEAVAKLGMWDGIQVSFTPVGADTAQQRIVRIEGVTHDITPMGWEMRLNCSGSGDQQYFILDSTIDGILNTNKMAP*
Ga0098035_10116742	F030560	AGGAGG	MAQQTFSGVPGAFAAGAVLTAAEQELIRDYMIAQIKEGMTGDTGEILPMIMDLTNNRIVLDSGGLEFSDGSLQTVAASSDPADMNLIVGLEMFL*
Ga0098035_10116745	F042378	GAGG	MDISEAIAEVQQPRSRYQLIHFVIGQHDTPEMRFYQLCLELQDMGYKLRMARLGVRKAEVEIGRLLETGDELDAIEAEEKQVGLEQTLVVMRGAERELAVLGDLFDESQKFTRDEIEHAQPEYWHARLTRQTNLQLMAGGVQWAQLDSMRQAGILEEAIAAHQPHPENGHQELAP*