Scaffold Ga0098035_1006624

Overview

Basic Information

• Taxon OID: 3300006738
• Scaffold ID: Ga0098035_1006624
• Source Dataset Name: Marine viral communities from the Subarctic Pacific Ocean - 3_ETSP_OMZ_AT15126 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4980
• Total Scaffold Genes: 13
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (53.85%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): -13.003
  • Long. (^o): -80.809
  • Depth (m): 135

Associated Families

Family	Category	Number of Sequences	3D Structure?
F015739	Metagenome / Metatranscriptome	252	Y
F018017	Metagenome / Metatranscriptome	237	Y
F031531	Metagenome	182	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0098035_100662411	F018017	N/A	LKNDSLNADNTTTKIDSLWANQQKIIPIPPLSSLKLHGDNCGGFRACHTCRGTRFVYIRSKWDNRITYKKCMACNGNGSIDVRTLN*
Ga0098035_10066242	F031531	AGGA	MLFNPDTNTYTDLKDGQLLATKMEQKEQVSNFEDLYVVELEREKTLVIKKITNEAWSEETKKRGTFFLEERNRDKKGITLTKSDCGKIAIMLKEISEK*
Ga0098035_10066248	F015739	GAGG	MIRPEKYQFNWKPKTKSKEDLELVRKLEKLVIELNINKTQLTRKTLQSFVDSYFNCEDTKN*