Scaffold Ga0098035_1005154

Overview

Basic Information

• Taxon OID: 3300006738
• Scaffold ID: Ga0098035_1005154
• Source Dataset Name: Marine viral communities from the Subarctic Pacific Ocean - 3_ETSP_OMZ_AT15126 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5716
• Total Scaffold Genes: 15
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 10 (66.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Autographiviridae (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): -13.003
  • Long. (^o): -80.809
  • Depth (m): 135

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005208	Metagenome	408	Y
F008138	Metagenome	338	Y
F042013	Metagenome	159	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0098035_100515410	F005208	N/A	MTLEELYWHRVFNLWTMYHSITDDLVYKAMWERKLKELMQKGFK*
Ga0098035_100515412	F042013	AGGA	MTHLEALDYYNQSKPKSEEILIKRKCFRCNKEKKMGKFERYCSPECRYHATKNYTSTYKVGY*
Ga0098035_10051545	F008138	N/A	MKNLPHVQWTRIENRHGGGIPDLYGICDGVSIWLELKCIKQNSINISPLQISWNYNNFRHGGKNYYIVQDARSKVIKLYDGDKGRELKRDGFRVPCIMELSPPYYWERLKDYLFLPPPPDVKDFLTAI*