Scaffold Ga0098035_1002672

Overview

Basic Information

• Taxon OID: 3300006738
• Scaffold ID: Ga0098035_1002672
• Source Dataset Name: Marine viral communities from the Subarctic Pacific Ocean - 3_ETSP_OMZ_AT15126 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 8220
• Total Scaffold Genes: 16
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 10 (62.50%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): -13.003
  • Long. (^o): -80.809
  • Depth (m): 135

Associated Families

Family	Category	Number of Sequences	3D Structure?
F039677	Metagenome	163	Y
F075976	Metagenome	118	N
F103079	Metagenome	101	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0098035_10026721	F103079	N/A	PMPATMTTAPATMTTPPEINIFDLVSIRKEIKMKNRKDPILLVHKVEKPTIYDAPEALGLIVKEREELNNYPFPLSREQQFELLYLMRSRKSGIITRAELHNLIFPEPVLH*
Ga0098035_100267211	F075976	GAG	MQMKQLFESWNKYLANNRWKYHILNETAFSRIVTDYGERGYVILTSDRSCEAELGLPAGKECSDEEIAIQDKVNKENMKQFLSDIRTAGFGYIPTLGGYKEDLIDPETGEPVRDEKGEIVKVDTDRPENSVIVVARPEQRAGHEELKSFGMLLADKYNQDSFFYKPPNDVDEGAYWIKPDGSVDMKFDTFTVNDLKQQFYTQMKRGPRHRFTALDENKEMVFRVRVAPGSTDRARKRYGEIFMKFSE*
Ga0098035_100267216	F039677	GAG	MNIGDLVRYCADPNDGRLGIVMSEVYDNRPTWEDEYPAVHVLTRHQHTGEEGMWTWLLEDIEVVSSV*