Scaffold Ga0098035_1002316

Overview

Basic Information

• Taxon OID: 3300006738
• Scaffold ID: Ga0098035_1002316
• Source Dataset Name: Marine viral communities from the Subarctic Pacific Ocean - 3_ETSP_OMZ_AT15126 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 8889
• Total Scaffold Genes: 12
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (8.33%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): -13.003
  • Long. (^o): -80.809
  • Depth (m): 135

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008105	Metagenome / Metatranscriptome	339	Y
F014794	Metagenome / Metatranscriptome	260	Y
F018815	Metagenome	233	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0098035_10023165	F018815	N/A	MNNCLENVIEHLKPFLLKDIIIRTDKKILKRGRLKIFQIKQYYINLSLEYKNSIKNYEIPYPFDIHLEQDETEAVLNYHLSSFVPISQLNKVKCLDTSSKTKIYNNLVYIWPSEETTV*
Ga0098035_10023167	F014794	N/A	MAMASIDNLAPTRSLIDLSKPDKGDFGIDDYELSFIFDDILLIEYADETKEGEIERNGVLIPTNALNKAWRKGKVILAGPDAKYAKEGDIVIFPNNMGVTINGVGITGKGKVKTGVFLNEERMFGICKKKDDSPKSDS*
Ga0098035_10023169	F008105	N/A	MNFFQVQNKLFYSKKDDAGYLDTEGEQSFVPFLFNRWLSFYDNNMSVFVNETFNRFGNIFDNKQESYKLYYHLIPRLKWKKISYIKKKKKEEQEIDLTAIAKNRNMSVRELKMYVENYE*