Scaffold Ga0098035_1001417

Overview

Basic Information

• Taxon OID: 3300006738
• Scaffold ID: Ga0098035_1001417
• Source Dataset Name: Marine viral communities from the Subarctic Pacific Ocean - 3_ETSP_OMZ_AT15126 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 11665
• Total Scaffold Genes: 25
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 18 (72.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): -13.003
  • Long. (^o): -80.809
  • Depth (m): 135

Associated Families

Family	Category	Number of Sequences	3D Structure?
F013357	Metagenome	272	Y
F017121	Metagenome	242	Y
F019113	Metagenome	231	Y
F021532	Metagenome	218	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0098035_100141714	F019113	N/A	METLEVGDLVRDKLNSGEGAYGLGVVVATDSAGWPEDQVPVLGNEQVYADQDIPGKRYDVYFNKFERTITFHGDYLEKV*
Ga0098035_100141716	F013357	GGAG	MARRKYVTGALVEARNSKYGKGFGIIVSGPNLKKLSAHGYQTFGDPQEWFKVHWFEKPGSVDAYYIRRGNGIVDMTKNQIKVVRT*
Ga0098035_10014174	F021532	GGA	MKNRKVIVLKDKWNTEATEPPAARALEMVQVMEDEFIETPFPLSLNAQKRLLELIYNRKSGIITRQELVDVLFNPADTEKGTIIRCRL*
Ga0098035_10014175	F017121	AGGAG	MFSLIRQILKKAQSFDAVYERLAKIESRLERFEKLADENESLWQFLDEQKEAEGIWSGNVDEFQDEFSDIIVRNMKPYGDA*