Scaffold Ga0098037_1151120

Overview

Basic Information

• Taxon OID: 3300006737
• Scaffold ID: Ga0098037_1151120
• Source Dataset Name: Marine viral communities from the Subarctic Pacific Ocean - 5_ETSP_OMZ_AT15132 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 779
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter → unclassified Candidatus Pelagibacter → Candidatus Pelagibacter sp. TMED64 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): -12.999
  • Long. (^o): -80.801
  • Depth (m): 90

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006383	Metagenome	374	Y
F069451	Metagenome / Metatranscriptome	124	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0098037_11511202	F006383	GGA	MLDSTDKMWAVQQPGTLLRGRSSHQYGKLALVLEKAYPGPTLSNGYPPRQYVKMQWVATGERFEEMLTNAHNCFDIVSSCDTLGPEEN*
Ga0098037_11511204	F069451	N/A	LVRIRKTAINAYSTLWFINLAERKAPLLLMEKINKQHWKVMKPDGTDCFLSENKLTTRMW