Scaffold Ga0098037_1119762

Overview

Basic Information

• Taxon OID: 3300006737
• Scaffold ID: Ga0098037_1119762
• Source Dataset Name: Marine viral communities from the Subarctic Pacific Ocean - 5_ETSP_OMZ_AT15132 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 900
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): -12.999
  • Long. (^o): -80.801
  • Depth (m): 90

Associated Families

Family	Category	Number of Sequences	3D Structure?
F018196	Metagenome / Metatranscriptome	236	N
F085805	Metagenome	111	N
F092191	Metagenome	107	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0098037_11197621	F085805	N/A	MKSKSISADADKIVSGLLVCKPLADEVYNKLRVLALADEENFRNNRIAERHRLNNGYSKGGH*
Ga0098037_11197622	F018196	AGGAGG	MNVETIKEAVEYKQGHFNMVQYILKQKPEWTISVYDKDEARFSLENSKDYKKIKRAIKDYQTEIVCYDNRNKRIGWAWFIPYNESDEDIVSDYSDTLTMNKWAEQFEKLHEQLNKEEA*N
Ga0098037_11197623	F092191	AGGAGG	MKLNQIVGITKILSDRKVPDDVEKFLNDEYYSKSKKENVKFGDMDLFHYIRVNIKDHKDLWKSYNEVEDRLYKIQKIMEE**VIK*