Scaffold Ga0098037_1072795

Overview

Basic Information

• Taxon OID: 3300006737
• Scaffold ID: Ga0098037_1072795
• Source Dataset Name: Marine viral communities from the Subarctic Pacific Ocean - 5_ETSP_OMZ_AT15132 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1214
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (71.43%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): -12.999
  • Long. (^o): -80.801
  • Depth (m): 90

Associated Families

Family	Category	Number of Sequences	3D Structure?
F010573	Metagenome	302	Y
F013362	Metagenome	272	Y
F075988	Metagenome	118	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0098037_10727951	F075988	N/A	IMVNKVSQWLIDYVKKKNGVDLTNVPSDKSWTELNPFRDSTILSDKVIKFINEKNLSAIKSSMDLVEQESDKATKEQRELNTVNKGEK*
Ga0098037_10727954	F010573	GGAG	MSSFVQDWNCNKCKSNNACYETFEDSEEGSIFECFDCKYMEVYREDVDTGKVIEDYQGYEHYYNNKQKGEK*
Ga0098037_10727956	F013362	AGGAGG	MMSSEKQLILIIITTVIIFGYQWYKDKKKNDYWKKYRRSQGWE*