Scaffold Ga0098037_1023033

Overview

Basic Information

• Taxon OID: 3300006737
• Scaffold ID: Ga0098037_1023033
• Source Dataset Name: Marine viral communities from the Subarctic Pacific Ocean - 5_ETSP_OMZ_AT15132 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2320
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (83.33%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): -12.999
  • Long. (^o): -80.801
  • Depth (m): 90

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007721	Metagenome / Metatranscriptome	346	N
F067815	Metagenome	125	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0098037_10230333	F067815	AGGAGG	MMENTHSTFLVLRIGEDKDNGKAEIDVVESFDLMVNAKKYIDAKDTIERMTPRFAWKHTQYKIQQVFYKSFVDVEKSA*
Ga0098037_10230336	F007721	AGGA	MKPIRSNELEFFKELIRDKFNDKEKAVRSEIHVEADKLSQKNKASFPKACGVDKELKWLKKANDEYLNFVRSKSMVEAKLLQKVSDIAEGISNKLDRLSKTRQWNESFHNFSAKEDGPEYFTNKLDDICFQEAEEHIKKGHKIYNALQEKRDNCRVIIHTGGDINNTVKTLQKEMGTADIRLAIPNNLLQIASN*