Scaffold Ga0098037_1006769

Overview

Basic Information

• Taxon OID: 3300006737
• Scaffold ID: Ga0098037_1006769
• Source Dataset Name: Marine viral communities from the Subarctic Pacific Ocean - 5_ETSP_OMZ_AT15132 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4630
• Total Scaffold Genes: 16
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 15 (93.75%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): -12.999
  • Long. (^o): -80.801
  • Depth (m): 90

Associated Families

Family	Category	Number of Sequences	3D Structure?
F038713	Metagenome	165	Y
F041144	Metagenome	160	Y
F097155	Metagenome	104	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0098037_100676910	F097155	AGGAG	MKTDKYYIDASSFVEVTGELADFMMQEKLGEKYYEDCIYVDEDDVYNFTDEGQEMFNNYVDIMTRILSEVNIVHEDQLQEGE*
Ga0098037_100676912	F041144	AGGAG	MLSDAITTVGFALQSYVNTCIHEDTEENRAERVELTLAWSIIKSHLEEKVE*
Ga0098037_100676913	F038713	AGGAG	MIFVKFTIDYGGYEYFDYAWFKDYGEAHYENGESITDKDIIQEVYGEGRGDEDFEENFNKETNTYTDYNDDVISVYKVQEMTQKELNVLVKMGVLYK*