Scaffold Ga0098033_1098765

Overview

Basic Information

• Taxon OID: 3300006736
• Scaffold ID: Ga0098033_1098765
• Source Dataset Name: Marine viral communities from the Subarctic Pacific Ocean - 1_ETSP_OMZ_AT15124 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 831
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): -13.003
  • Long. (^o): -80.809
  • Depth (m): 275

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002601	Metagenome / Metatranscriptome	544	Y
F021117	Metagenome	220	Y
F072243	Metagenome	121	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0098033_10987651	F002601	N/A	MIKLIVFSVLLNAGEITALPPDGTKIEARKRSGKGQRGRKRGGSGLR*
Ga0098033_10987653	F072243	AGGAGG	MGFLDILTKPINPARQNFDEFDIFLAERNVRDVSYKDWYDYDSAYASYRETGIDPYDTKSKHWSSKFKHPLSPERFIQDKESIKWFDTIENKFVNKEAVAQQEIERLEYLESMPLNGNKKR*
Ga0098033_10987654	F021117	GGA	MEIKRDDMFQAARWLNLMVGIMNIYLYTHGGGYHLLGIAMLNVGAWAFT