Scaffold Ga0098033_1072324

Overview

Basic Information

• Taxon OID: 3300006736
• Scaffold ID: Ga0098033_1072324
• Source Dataset Name: Marine viral communities from the Subarctic Pacific Ocean - 1_ETSP_OMZ_AT15124 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 997
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses → Prokaryotic dsDNA virus sp. (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): -13.003
  • Long. (^o): -80.809
  • Depth (m): 275

Associated Families

Family	Category	Number of Sequences	3D Structure?
F010920	Metagenome / Metatranscriptome	297	Y
F016673	Metagenome	245	Y
F067830	Metagenome / Metatranscriptome	125	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0098033_10723241	F010920	N/A	LRKKKMSEIKTYDVLISYPIKVGAENEEHVKEIIMSNELLRNAADLTLKITEAKDE*
Ga0098033_10723242	F067830	GGAGG	MSDKKSKLVIVDEIGNDKALAYRNKPSVEIYPTTKEVGFSEFSYSWEEIIAVGKKLEELHRKSLADVL*
Ga0098033_10723243	F016673	N/A	MISESETEDIVIKSYLELYLKALNESKPYKFIKIIKSRMLELIKRKQLKNQNK*