Scaffold Ga0098033_1062049

Overview

Basic Information

• Taxon OID: 3300006736
• Scaffold ID: Ga0098033_1062049
• Source Dataset Name: Marine viral communities from the Subarctic Pacific Ocean - 1_ETSP_OMZ_AT15124 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1087
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium TMED123 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): -13.003
  • Long. (^o): -80.809
  • Depth (m): 275

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003515	Metagenome / Metatranscriptome	482	Y
F009537	Metagenome / Metatranscriptome	316	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0098033_10620492	F003515	GGAGG	LIKKTLTGIAIAMFCFMLSEVSAGPPKGMVKQMIPFPVMCLPATAAQNHFAVLMGALIQDYGVHISMTFSSSPDQSQRVAIIENPATGLAGVLMITDEQTCIAFSGEDRKEFIRPPDHPMGEANEDTKA*
Ga0098033_10620493	F009537	AGGA	MNVDSRIITLALFLIAQSVGAIWWASGLSSEVNRLSGLVDKSDQFQTEIQRAVSGLDVLNFKVEELWKAIERLEEVDNDLREVDGEIMVQHEAIFQWLAEDSPEQTAKGNPYD*