NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0098033_1046397

Scaffold Ga0098033_1046397


Overview

Basic Information
Taxon OID3300006736 Open in IMG/M
Scaffold IDGa0098033_1046397 Open in IMG/M
Source Dataset NameMarine viral communities from the Subarctic Pacific Ocean - 1_ETSP_OMZ_AT15124 metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1282
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)-13.003Long. (o)-80.809Alt. (m)Depth (m)275
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000782Metagenome894Y
F012880Metagenome276Y
F020711Metagenome / Metatranscriptome222N

Sequences

Protein IDFamilyRBSSequence
Ga0098033_10463972F000782AGGAMTKHEFKNSVKGIFSVRWLKNDGTEGYIHRGILGLNKKVDGQPNEHSDYVLVYKIGNGYGTKRRWGNVNPNTITHINGVAI*
Ga0098033_10463973F012880GGAGMKFNVITFIWSIALVLLTFQLAISYYNPEFSNTIVYKFAMLMNGFMFGMVITDWSNNA*
Ga0098033_10463974F020711GGAGMPNLPKIITSNGTDISPILEEMISYLKEEKELGNLDKIADVKVPLTSSADWKLICGVLCNSIVEWASQNSNNGGKDLIIHMQSDIGYLVRRLGLVE*

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