Scaffold Ga0098033_1021512

Overview

Basic Information

• Taxon OID: 3300006736
• Scaffold ID: Ga0098033_1021512
• Source Dataset Name: Marine viral communities from the Subarctic Pacific Ocean - 1_ETSP_OMZ_AT15124 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1996
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (66.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): -13.003
  • Long. (^o): -80.809
  • Depth (m): 275

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005148	Metagenome / Metatranscriptome	410	Y
F015879	Metagenome	251	Y
F041259	Metagenome / Metatranscriptome	160	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0098033_10215122	F015879	AGGA	MKKDDVIIMTCDVCGAMSHAVKAHVQVGYYVKDEFVICKICFGELK*
Ga0098033_10215124	F005148	GGAGG	LKQKKYEEFLKRTLPESEEVECKKCERKYSDEWNLLSLAKLDMCMLCANRNIDKETIERKYQNVK*
Ga0098033_10215126	F041259	GGAG	LNKSRVARDLYRKVFNDNLINLSDGDARKQVVKDFLNDPVNKKSGWKAKDARFFRLGFQKVAKENNFNVMNVGVTPTPSRSKTNKGSMNINVKSKQK