Scaffold Ga0098033_1014652

Overview

Basic Information

• Taxon OID: 3300006736
• Scaffold ID: Ga0098033_1014652
• Source Dataset Name: Marine viral communities from the Subarctic Pacific Ocean - 1_ETSP_OMZ_AT15124 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2486
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (57.14%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): -13.003
  • Long. (^o): -80.809
  • Depth (m): 275

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000747	Metagenome / Metatranscriptome	908	Y
F017655	Metagenome / Metatranscriptome	239	Y
F017843	Metagenome / Metatranscriptome	238	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0098033_10146523	F017843	GAGG	MKKLLCALMMLPMSLFAADFDRIGVDVSGFNSDGVRFGIANNGSASLGIAGDGYTFTFDQDDNDMAVSAYGVELSRSDSKKVGVGYGAGIGILDGGVHYNWMESGDHVVGGGTTLTVGGFDLATAADWNLTASDITGTVGTSMDLWGAQASAVSKWDIDDFSYDGLELGAGYAIPVASGIHITPSVGVDFDSDWGRGDATASVSISLSFGSNGIPAS*
Ga0098033_10146524	F017655	N/A	MVNGNPFSKSVSLGHIIATIGIIIAGFTFIYDLREAIAILQYKGDTVEERLERIQQRTDNQFDQIMDHLERLESKIDEMIIERNE*
Ga0098033_10146526	F000747	N/A	MRKLLVLLLLIPLAGSARMFPTEFPIKAVCWDSVDEALQYHQEMLGEYPIGKGWINTKDDPSFAAIMYNPVKPSWTFLSFHKNKDAVVVCAITGGSQWEILTPGEDEIQL*