Scaffold Ga0098033_1010343

Overview

Basic Information

• Taxon OID: 3300006736
• Scaffold ID: Ga0098033_1010343
• Source Dataset Name: Marine viral communities from the Subarctic Pacific Ocean - 1_ETSP_OMZ_AT15124 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3019
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (83.33%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): -13.003
  • Long. (^o): -80.809
  • Depth (m): 275

Associated Families

Family	Category	Number of Sequences	3D Structure?
F016063	Metagenome / Metatranscriptome	250	Y
F025855	Metagenome	200	Y
F042855	Metagenome	157	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0098033_10103431	F042855	AGAAG	MATFEAQVEGLTSLSIDGSSAPTQTELTQFLTDGAKEVINVLPDDLLELCTSEQSFTSGTPQTLNTGKVMYATRSDGTIAQPCRYIPSRMVGRALDSGDMNAATTTDPIYYIKNNTLDIA
Ga0098033_10103433	F025855	AGGA	MRIMKIKNCVHCQTPNKGGWFYCRDCGKKASKIRYTTNLWMTSDIGKRTDVELTSQSMDHNMSEMKRRIGYA*
Ga0098033_10103434	F016063	AGGAG	MRSELLEKSSGKYQTGERAVEYIDNGAARSMTLLAAQSGTLFAVDMSTVDNNVTVTLPTASAAVAGVNYDFCFTVDSDDDADFIINTGAAGTDIYGGIITLAANSTIDAFAGISTITVDGSVAQSSEGLKMSFVCDGTNWHLSGHIMTAVGTVHLVGAAGV*