Scaffold Ga0098038_1171722

Overview

Basic Information

• Taxon OID: 3300006735
• Scaffold ID: Ga0098038_1171722
• Source Dataset Name: Marine viral communities from the Subarctic Pacific Ocean - 5B_ETSP_OMZ_AT15132_CsCl metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 713
• Total Scaffold Genes: 2
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): -12.999
  • Long. (^o): -80.801
  • Depth (m): 30

Associated Families

Family	Category	Number of Sequences	3D Structure?
F047635	Metagenome	149	Y
F059122	Metagenome	134	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0098038_11717221	F047635	N/A	TDWVVGNGIFTPRRCVTEDKDLNKLFEDIDILYQSANVALSFNLLNPINNTQHEGFFYVHPGLVLDMLIEKYKTVVLRNNYSEDVYTIIIYKI*
Ga0098038_11717222	F059122	N/A	MLKTVNQSWGVSEKFRNRYGSTWADMDFFFKDKVYTETFKTDPMNTEVGKLQLSGMSIPFKFKDVISHSKLLSRMVNLSYKADLSEKFEVDVKNKTFLLNRQEINRLRETLDDTLVTIQRSYELGLYL*