Scaffold Ga0098038_1089516

Overview

Basic Information

• Taxon OID: 3300006735
• Scaffold ID: Ga0098038_1089516
• Source Dataset Name: Marine viral communities from the Subarctic Pacific Ocean - 5B_ETSP_OMZ_AT15132_CsCl metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1071
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): -12.999
  • Long. (^o): -80.801
  • Depth (m): 30

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004603	Metagenome	431	Y
F015990	Metagenome	250	N
F027830	Metagenome / Metatranscriptome	193	N
F059873	Metagenome	133	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0098038_10895161	F004603	AGGA	MIFSININGLIIDWCYNLDCQEKQYHKTWIPKLRDIQIITKDLNGLTISEVKKIILEDIQPDITMVKEHNNKLARARRIGR*VLNTLE*
Ga0098038_10895162	F059873	AGGAG	MSIEYFGVKIKATTYGDFADDVKEITHADIRLSVPCEVSNEKKFEKAKDNLLKAVIDIYALEDQNQVDVTIEYEYFGVNN*
Ga0098038_10895163	F027830	GGAG	MNKITFNIAFGKYSAYFRDRGFGSQLPYISETYSKATGEGGYLLRDENDMHIAYITKNGKVEA*
Ga0098038_10895164	F015990	GAGG	MTGKGSGRRIEDINKIRNNWDSIFKKRDKKQITKVIIEFEMPGYPSVDEINNHVEKLLKEDKIIAL