Scaffold Ga0098038_1084367

Overview

Basic Information

• Taxon OID: 3300006735
• Scaffold ID: Ga0098038_1084367
• Source Dataset Name: Marine viral communities from the Subarctic Pacific Ocean - 5B_ETSP_OMZ_AT15132_CsCl metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1110
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): -12.999
  • Long. (^o): -80.801
  • Depth (m): 30

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008977	Metagenome / Metatranscriptome	325	Y
F035485	Metagenome / Metatranscriptome	172	Y
F097151	Metagenome	104	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0098038_10843671	F097151	N/A	NNNKNKRLIMKKTKTIDISQFELSADDKRQMKSMDKHSSSTPNYKENKRVNLDYFNEGELDDIAVDDYSECDGREDLKTLGDIGMDVY*
Ga0098038_10843672	F008977	AGTAG	METKENNEQIIKVLSFVLSKIDDLEVEQSRHKEMFYKVRKNLTDANDLINQILDVLEIENPELYTKTIEQYQDTHMKDLVSTLDKHIQELDDFDDEQILELLTNIVGDA*
Ga0098038_10843673	F035485	AGGAG	MDSEMIIFLEDLKALLLEIDTHHEEDQNEILIEVIDLIDDKILDLES*