Scaffold Ga0098038_1064474

Overview

Basic Information

• Taxon OID: 3300006735
• Scaffold ID: Ga0098038_1064474
• Source Dataset Name: Marine viral communities from the Subarctic Pacific Ocean - 5B_ETSP_OMZ_AT15132_CsCl metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1305
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (83.33%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (83.33%)
• Associated Families: 6

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): -12.999
  • Long. (^o): -80.801
  • Depth (m): 30

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006867	Metagenome / Metatranscriptome	363	Y
F015346	Metagenome / Metatranscriptome	255	Y
F021674	Metagenome	218	Y
F059941	Metagenome	133	Y
F063682	Metagenome	129	N
F098215	Metagenome	104	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0098038_10644741	F098215	N/A	DFEYQLGDLVSFNSRRLTEEYINDVVLTGVVIKQRFVFTADNKFLVKTPEKDYWVSRPALTLLSKAQNKT*
Ga0098038_10644742	F006867	AGGAG	MLHGKELHKSIQKRCRIQPGMLVKSSHADVIDKLALVVSVSPACSFDRDYEGAEEHIFYMCEPFDGTPSFVDYVCNLEQVS*
Ga0098038_10644743	F059941	AGCAGG	VKLGTLVQYKAYNTVLDTGYVSKYDDNPEMIWVTYSKLGPQRVRLDSTMMEVISEAR*
Ga0098038_10644744	F063682	GGAGG	VKPGDLVRIRKTSIDHMSANWFIWHAERKTPLVLIKELNKSYWNVLKPDGETVFIHKSHLTKRMY*
Ga0098038_10644745	F015346	GAG	MEHRLYNVGELVAVASNRVLGIITRSNYWALDEYLGGEIEFVDVMFGGHESKQYPVRYLLEL*
Ga0098038_10644746	F021674	GGAG	MERETYNTRLKTNPKDIPVGSLLRCKKHCRKNVTIRQNGEYGILVTTVNKGKYITHDVLFPNGTRCIYMPLNWEVVSYAR*