Scaffold Ga0098038_1053088

Overview

Basic Information

• Taxon OID: 3300006735
• Scaffold ID: Ga0098038_1053088
• Source Dataset Name: Marine viral communities from the Subarctic Pacific Ocean - 5B_ETSP_OMZ_AT15132_CsCl metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1460
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (50.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): -12.999
  • Long. (^o): -80.801
  • Depth (m): 30

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005611	Metagenome	395	Y
F022079	Metagenome	216	Y
F026744	Metagenome	197	N
F084115	Metagenome	112	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0098038_10530882	F022079	AGAAGG	MTKYANYVVITDDKGKKRAFYNFHELIKYLDSFKMSFLPDNFTYTIHEE*
Ga0098038_10530883	F026744	GAGG	MKKKKWTSEENKLASMLAWVCCHADEDCPSEYRTKHFRQHLKEAVDYLENSGWYDYNQQARGK*
Ga0098038_10530884	F005611	GAGG	MKTYKVTAGETIYAVYETEIKAKNKKQAEEIASDLNAYDYKSNDWSNSAGDFAIEKIEEVEK*
Ga0098038_10530885	F084115	N/A	MKNFKFHYNTIGDCFYDIYCQPNCTKKEDLLKDMAGILNGELTAEDFKKEILQWIGERSDECYLDDDCQIRRFDEHK*