Scaffold Ga0098038_1053007

Overview

Basic Information

• Taxon OID: 3300006735
• Scaffold ID: Ga0098038_1053007
• Source Dataset Name: Marine viral communities from the Subarctic Pacific Ocean - 5B_ETSP_OMZ_AT15132_CsCl metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1461
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (40.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → Xanthomarina → Xanthomarina gelatinilytica (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): -12.999
  • Long. (^o): -80.801
  • Depth (m): 30

Associated Families

Family	Category	Number of Sequences	3D Structure?
F020035	Metagenome	226	N
F103091	Metagenome	101	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0098038_10530072	F020035	GGAG	MKIKLEPFEIQMAADVATRRFIENLKMGKSFSYGYKGSDEKTLSLGIMGACAELAFAKSQNQYFNGSYSDKYSRYTDTDMQKGIEIRSQKRKPNNFLLIRPNEKKAKYVLVIDEGGFEFSLIGWYAFIMEEPDRLTNFGYPNRPPAYRVDIKELRPIADLKC*
Ga0098038_10530074	F103091	N/A	MKLTTTLRAEYDSLPNEIKEKVSYGDYCNDPNIKTVIETAKSIAIGRMQIAIQRKKGNFRN*