Scaffold Ga0098038_1049239

Overview

Basic Information

• Taxon OID: 3300006735
• Scaffold ID: Ga0098038_1049239
• Source Dataset Name: Marine viral communities from the Subarctic Pacific Ocean - 5B_ETSP_OMZ_AT15132_CsCl metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1524
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (88.89%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): -12.999
  • Long. (^o): -80.801
  • Depth (m): 30

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006867	Metagenome / Metatranscriptome	363	Y
F031481	Metagenome	182	Y
F098215	Metagenome	104	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0098038_10492392	F006867	GGAGG	VLHGKELMKSIQKRCRIKPGMLVNSINPSNGIKKLALVVELSPGCMFDRDYEEAEEHIFYRCQSFDGTPDFVDYVCNMEKFS*
Ga0098038_10492394	F098215	GGA	VKADFAYQLGDLVSFKSRRLTEEYIDDFVLTGIVIDQRLVFTADNKFLVQTPEKDYWVSRPSLTLLSRAQKKLINT*
Ga0098038_10492398	F031481	GGAG	MKQGDLVKRQQGWMGWERQQLGLVLWVDRAVVKVQWSGDYGSFAHPITSLEVLNERR*