Scaffold Ga0098038_1047692

Overview

Basic Information

• Taxon OID: 3300006735
• Scaffold ID: Ga0098038_1047692
• Source Dataset Name: Marine viral communities from the Subarctic Pacific Ocean - 5B_ETSP_OMZ_AT15132_CsCl metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1554
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (85.71%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): -12.999
  • Long. (^o): -80.801
  • Depth (m): 30

Associated Families

Family	Category	Number of Sequences	3D Structure?
F031695	Metagenome	182	Y
F055203	Metagenome	139	N
F057668	Metagenome	136	Y
F077802	Metagenome	117	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0098038_10476922	F077802	GGAG	MTTELYPTDYVIIDSDTKKPIEGYEHIYHYTSVIDHFNEILTDKNEGWEYVSMSELSDEDKKNYKKTIKEMEEFHNECL*ELW*FT*S*
Ga0098038_10476923	F055203	GGAGG	MNACESCGDLHDPSDMVNTMEDFYFCYTCEVKNRELYDFMWFSKFSKKVIKEVNDD*
Ga0098038_10476924	F031695	AGGAGG	MMINFIEEWICDGCGGIFDKTEMVESIQLPYYACQPCEDELKKTMED*
Ga0098038_10476926	F057668	N/A	MGRKNKWELERDKKDALKKKAMKSLTQDQLGAIKFTHETLSNALDMLTECNDLYLSDISKLNDAFWKLKNEFKLEDKRHG*