Scaffold Ga0098038_1045929

Overview

Basic Information

• Taxon OID: 3300006735
• Scaffold ID: Ga0098038_1045929
• Source Dataset Name: Marine viral communities from the Subarctic Pacific Ocean - 5B_ETSP_OMZ_AT15132_CsCl metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1589
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (42.86%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (40.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): -12.999
  • Long. (^o): -80.801
  • Depth (m): 30

Associated Families

Family	Category	Number of Sequences	3D Structure?
F018478	Metagenome	235	Y
F025412	Metagenome	202	Y
F099320	Metagenome	103	N
F100003	Metagenome	103	N
F103288	Metagenome	101	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0098038_10459291	F103288	N/A	AVLAWTSLFKQTFSTKEGFRYVYEPISKILYTLDFKPLNCSYCLSFWIGLALSIAFIDLSYMIIFLYFEINR*
Ga0098038_10459292	F025412	N/A	MDYRELKWGALKSYATKLGINTKGMTKEVILEWLDAMPDVAHGIEELTPFTGIKQQHPLFDEVEPYLPYLKAYKKLNAISREPKVNEAIATLFLKYIEQDKNIRLNLGCGICKQRYYQRMIAGYNRLVEEYGGERI*
Ga0098038_10459293	F099320	GGAGG	MEENVYSYCLEVHEDGQLYMVTEYMNGYITIWPANATIETEGEVYFINLHED*
Ga0098038_10459294	F100003	N/A	MKIKKKHYKALQYASLIQRWKYLPPNFIFEVVQNSEVNETMLNRIRIGQNVKRI*
Ga0098038_10459295	F018478	AGG	MLKEYKEMDWSKEYTYKDKKIYISHETKKYIICSFNENGVGKFKVDKTEFYG*