Scaffold Ga0098038_1045647

Overview

Basic Information

• Taxon OID: 3300006735
• Scaffold ID: Ga0098038_1045647
• Source Dataset Name: Marine viral communities from the Subarctic Pacific Ocean - 5B_ETSP_OMZ_AT15132_CsCl metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1595
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (62.50%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): -12.999
  • Long. (^o): -80.801
  • Depth (m): 30

Associated Families

Family	Category	Number of Sequences	3D Structure?
F010357	Metagenome / Metatranscriptome	305	N
F015604	Metagenome / Metatranscriptome	253	Y
F081227	Metagenome / Metatranscriptome	114	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0098038_10456471	F010357	AGGAG	MYIDVKYSFRPNPKCNVEVVRYVETMYSFREVKSKCGQTDVDGGRVLCDSCCELADN
Ga0098038_10456472	F015604	N/A	MNNKLLKQKINRKKSLIADLPFDSEGVTFDNPSLTVEQGIAKANRLALKGVEANSLNLWQLRGGK*
Ga0098038_10456476	F081227	GAGG	MSNLAIQDLYQRKIDEASEMSNEQLAKELKGSVSNTNGMMSRDTMIDIVAMKLSNAELRDEL*