Scaffold Ga0098038_1043002

Overview

Basic Information

• Taxon OID: 3300006735
• Scaffold ID: Ga0098038_1043002
• Source Dataset Name: Marine viral communities from the Subarctic Pacific Ocean - 5B_ETSP_OMZ_AT15132_CsCl metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1651
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (85.71%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → Xanthomarina → Xanthomarina gelatinilytica (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): -12.999
  • Long. (^o): -80.801
  • Depth (m): 30

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002146	Metagenome	590	Y
F004376	Metagenome / Metatranscriptome	441	Y
F008387	Metagenome	334	Y
F020878	Metagenome	221	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0098038_10430021	F008387	GAG	MESILIITKWVLLLICSVIGMVILATDPTQQSLGLILTFGCFIVFALDVARTFTN*
Ga0098038_10430023	F002146	GGAGG	MIKNILNFLDYVLFLAMMYFCYLGLKYSVQIEQLIIELKGGAI*
Ga0098038_10430024	F004376	AGGGGG	MKCLDCGFNEGTLLKQFQEQPEKNYSWYELSEMTEVCASCGSENIKIEEGE*
Ga0098038_10430025	F020878	AGGGGG	MIIKLFGKQITINNKKWQQDLLAWSLLYRTEIVIAIASFILGAIIF*