Scaffold Ga0098038_1040779

Overview

Basic Information

• Taxon OID: 3300006735
• Scaffold ID: Ga0098038_1040779
• Source Dataset Name: Marine viral communities from the Subarctic Pacific Ocean - 5B_ETSP_OMZ_AT15132_CsCl metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1705
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (100.00%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (100.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): -12.999
  • Long. (^o): -80.801
  • Depth (m): 30

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008049	Metagenome	340	Y
F010274	Metagenome / Metatranscriptome	306	Y
F016455	Metagenome / Metatranscriptome	247	Y
F077192	Metagenome / Metatranscriptome	117	Y
F099138	Metagenome	103	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0098038_10407791	F016455	GAGG	MSSNKETDTMARWHTYHENGGSADFEVFYAHSEKNQKLLVRVAKGKALLSRSV*
Ga0098038_10407792	F010274	GAGG	MKRRNEILNALEQMTDSLYELGHADAQYFEEIIGETMDIVMEYDE*
Ga0098038_10407793	F099138	GGAG	MSYSADSNITLCYNNDKAFIYRLIRIDGEVDDWHAIDLEVDACYLNDDTKYIGLTSNPVKRAQYHRTKKGKDLVMQIFRIANSPAQAKYYEAEAIYKFEEKFGNVPEFSKGGDTFAGA*
Ga0098038_10407794	F008049	AGGAG	MSQHNQLNWSDFLLCIGMELAFHKNGERPIQEQMIAEKMMDLGVWNE*
Ga0098038_10407795	F077192	GAGG	MKNIKRNPNRSKRVPRRTAINWMDAMTPQGQALYCAEFVDNAYNYRGEA*