Scaffold Ga0098038_1027485

Overview

Basic Information

• Taxon OID: 3300006735
• Scaffold ID: Ga0098038_1027485
• Source Dataset Name: Marine viral communities from the Subarctic Pacific Ocean - 5B_ETSP_OMZ_AT15132_CsCl metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2136
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (100.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): -12.999
  • Long. (^o): -80.801
  • Depth (m): 30

Associated Families

Family	Category	Number of Sequences	3D Structure?
F012403	Metagenome / Metatranscriptome	281	Y
F032478	Metagenome / Metatranscriptome	180	N
F035971	Metagenome / Metatranscriptome	171	N
F067120	Metagenome	126	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0098038_10274852	F012403	AGGAG	MRIKPINPVAKAVAQSRRRASVVPDKTKYNRKKDKHDANQAGKYEESKDN*
Ga0098038_10274853	F067120	AGAAGG	MQIKLENMKNQKTTKPEGKRDHWRLHNKRKQNVRRTARRNTQIAQEQSYG*
Ga0098038_10274854	F035971	AGGAG	MGNLTWNEVAQIETDKRYMDMYGLSQLDMEDMLHEDMPCMLAMSILSDAQHVMSYDQEQARQFINRAKYVIRHIKSDSGLVTTPTTNTNTQTN*
Ga0098038_10274856	F032478	GAGG	MYWEVGIKMDGISGVYDVHPQPLEQPIWNHAVEHALDMAQAMYPDKHIELEFVKEFDSE*