Scaffold Ga0098038_1025083

Overview

Basic Information

• Taxon OID: 3300006735
• Scaffold ID: Ga0098038_1025083
• Source Dataset Name: Marine viral communities from the Subarctic Pacific Ocean - 5B_ETSP_OMZ_AT15132_CsCl metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2251
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (66.67%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae → unclassified Rhodospirillaceae → Rhodospirillaceae bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): -12.999
  • Long. (^o): -80.801
  • Depth (m): 30

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001839	Metagenome	628	Y
F004990	Metagenome	416	Y
F008915	Metagenome / Metatranscriptome	326	Y
F059875	Metagenome	133	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0098038_10250831	F059875	N/A	MKVLVLIFGVITNDGQIDLVKVPKFELKNINSCEKAIDTHTKWVDNPYFGQNDLPFGFYTYKNRVVMLQYCVLKGVESE*
Ga0098038_10250832	F008915	AGGGGG	VNNEVNLDLYEMQSAAHLGILRCLESKKHKESWGYNYKGSLNDQMAKSISGAMGEVAASKFLNIKFEYHCNVGGVPDLIFKDLKLQVRTQIPKNNNSLIIRPKAKPGELYILIIDEAPKFKILGFVNSTYVLGQEQWKTTFGLNRPFCYSIPPEKLTPINLLKDSTWN*
Ga0098038_10250833	F004990	AGGA	LELDDYFDPKKPCIICKEGADLRENNKYYCCDHYALYVLGKPMSQIEKELNNE*
Ga0098038_10250835	F001839	GAG	MKYFEKVDKDLINNRALNSHEKLIYIICKSFKNAPRGCRISHKYLMIRTGIKTKAKLISHLDRLSLFGLMARKQIDNGTCHYVFDKPTMQEYIQHNLNKRRKISLSKNRHKRNLDRALSYPNIINIPKVIK*