Scaffold Ga0098038_1024335

Overview

Basic Information

• Taxon OID: 3300006735
• Scaffold ID: Ga0098038_1024335
• Source Dataset Name: Marine viral communities from the Subarctic Pacific Ocean - 5B_ETSP_OMZ_AT15132_CsCl metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2288
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): -12.999
  • Long. (^o): -80.801
  • Depth (m): 30

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008105	Metagenome / Metatranscriptome	339	Y
F014794	Metagenome / Metatranscriptome	260	Y
F018622	Metagenome	234	Y
F018815	Metagenome	233	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0098038_10243352	F018815	N/A	MNVSLEKVSNFLKPFLLKDIVIRTNKKVLKKGKFKIFQVKQYYINLTLEINGANKNYEIPYPFKMNYDDDKGVLNYHLSSFIPLNQMTRVKFLDSSSKSKLYDNLVFILPSDGTTLK*
Ga0098038_10243353	F018622	N/A	MIVQKATLDSLLSNNVLEIRFPRRIAKPGLAATRRMLCTNSLDLLNSVNGRISLNYFAPKGPRKPYLGPDNLSVAWDVMMQNYRNINCNQVDVIQEIPANEDFWVYFNENIYPLSQQQKFNFMNS*
Ga0098038_10243354	F014794	N/A	MAMASIDNLAPTRSLIDLTQKDKGDFGLDDYDLDFIFDDILLVEYVDESDDGDEIIRNGIVVPTNALTKAWRKGRVVLAGPDAKHAKEGDIVIFPNNMGVSISNITISGGRKVNKAIFLNEERMFGICKPKDDSTKSNS*
Ga0098038_10243355	F008105	N/A	MNFFQLQNKLFYSKKDNAGVLDSEGEQAFVPFLFNRWLSFYNKELPGFVNETLNKFGGIFDDKQEVYKLYYYLIPRLKWQRISYIKKKKKDEDEVEGLNAIAKNKNISKRELQQYVELEKNLRK*